Plant GARDEN: a portal website for accessing plant genome, DNA marker, and SNP information

H. Ichihara, H. Hirakawa, A. Ghelfi, M. Kohara, M. Yamada, T. Tamura, A. Nakaya, Y. Nakamura, S. Shirasawa, E. Sugihara, S. Tabata, S. Isobe
Various plant species have been sequenced with the advance of NGS technologies. The assembled reference genome sequences are used to analyze polymorphisms and haplotypes within the species by comparing re-sequenced data of multiple accessions. These data have been contributed to plant science and applied industries, such as crop breeding. Plant GARDEN (Genome and Resource Database Entry; https://plantgarden.jp/en/index) stores publicly available genome sequences, gene sequences and annotations, markers, QTLs, and SNPs. The official version was opened in July 2020. The data registered in Plant GARDEN in current (December 2020) is 119 assembled genome sequences, 5,890,957 gene sequences, 287,703 DNA markers, 8,217 QTLs, and 3,812 SNP list (vcf files). Plant GARDEN aims to provide plant genome information to plant science, breeding, and education. Therefore, we have tried to create a simple and user-friendly WUI (web-based user interface).
Ichihara, H., Hirakawa, H., Ghelfi, A., Kohara, M., Yamada, M., Tamura, T., Nakaya, A., Nakamura, Y., Shirasawa, S., Sugihara, E., Tabata, S. and Isobe, S. (2022). Plant GARDEN: a portal website for accessing plant genome, DNA marker, and SNP information. Acta Hortic. 1339, 415-418
DOI: 10.17660/ActaHortic.2022.1339.52
https://doi.org/10.17660/ActaHortic.2022.1339.52
database, plant, genome, gene, marker, SNPs
English

Acta Horticulturae